Scaffold Ga0114905_1052972

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1052972
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10529722	F002430	AGGAG	MTLNLPKKQVNAILVALDAEIEMQLCGRPVDWESFPEVAAMLMAYYTTRCEFEENCGD*
Ga0114905_10529723	F016757	GGAG	VTELTWEVKVEATTQRDIIVHAKTEYEAWIKAQIEMQGLVGGENTQVLSAKEITDDDA*
Ga0114905_10529725	F003073	AGGAG	MAKKLENMTQDERIAYWENIREKERINRRNRIAKLTMEQRAAVININKLLDTVLDVALYPDMGGIKAVTVYDLHELSDAMDALQYQFNLRGE*