Scaffold Ga0114905_1024307

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1024307
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2367
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F053548	Metagenome	141	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_102430710	F005547	AGG	MKVWVMQGSYEGELFSSVHLTQKGCALACISDLMDFHGIDDDETALAVMHNSYAFTDTEKEHQEATEPIEWDQEKLKEMTSEQLWKIFSDWCEMSWDRMGDRGYNLDCNTVEIQA*
Ga0114905_102430711	F057769	AGGAG	MIEVGSIVESIGWVFGFNKSNHGLVIDMMADGKIARVFWMATQKSGFCSVKDLKVIT*
Ga0114905_10243074	F053548	GGAG	MKDSGAPSTGDLVVALHDVKRDISCVGLVMETKGIECKILWSSENNPVGWWQRSKLKVVSPSGRDIKV*
Ga0114905_10243079	F010950	GGAG	MNIWVVRQTCLYSNETYLSTHITEKGALITAIKTVREDLTNGFDEDELEDMRPGMPHHPEEDLMQYGSDQLRRIVDDWWMYSMDMNEHGQYEIHQTQVAG*