Scaffold Ga0114905_1009813

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1009813
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4051
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F047714	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_100981311	F047714	AGGAG	MDLKISKRHIVTLWHETQVGNIHTCREKQLEFSEMMWALYEDMQPEVFDVKKSLKDLTTFDVDKDCDKYHEEQDHKAMEKQ*
Ga0114905_10098133	F016410	N/A	MRKFSSKKEQLEWADKLLRKLANSNTGGVTPIIKSMITENYIRRLKK*
Ga0114905_10098135	F010920	N/A	MEVYLMSKIKKYDVLISYPIQVGAEDEEHVKEILMASPLLRDAADLTLQITEVKDEIK*