Scaffold Ga0114905_1005087

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1005087
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6071
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F053336	Metagenome	141	Y
F078817	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_100508714	F078817	GGA	MPNKPLTRKVKDHRGNDHEVYKWYWMKGWEFYQTEPADEFGVVMGFMTNCPCPEWGSQHEAELHDVAAVVAEKYDLWELAPPQGWEWLEKENCNAV*
Ga0114905_100508716	F053336	AGGAG	MKEYFEYLTELRDGGTMNMMWAPTMLQADFDLSVKESREVFSKWCESLKSG*
Ga0114905_10050877	F007343	N/A	MFWRKQMRVSDLQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNNQYRYWEVPAFAKSRAAYGIAKQRACDTWGCE*