Scaffold Ga0114905_1005069

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1005069
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6084
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y
F029400	Metagenome	188	Y
F029601	Metagenome	188	Y
F081216	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_100506910	F024648	AGGA	MCEYHLYPGDMFRTKAGLGLIVEKSGGYFHYSNVGDDQRKGYPKIKTKRFYGYCDNMSHGQILEVILLPNRKYRRKRK*
Ga0114905_100506915	F029601	N/A	MMKVGDLVRFDAPDDKFHDSKGIIVRCVTSNIYQQGRHYEVQTLDGYTIVALDFELERLENEIE*
Ga0114905_10050693	F081216	GGA	MNFQVGDLITLKHYRGNPDAPPPLAIVVSTIALSFADRIMIQHRGSSRPEMAAPEHWIVVSRYENR*
Ga0114905_10050695	F029400	GGAG	MKIGDLVTFCPEAWGTPLEDRPLGIVTNVEDRSYGGRAASRSTGASQMITAIFPGDDVPYSSNIKDFEVVNENW*
Ga0114905_10050699	F005524	GAG	MDIGDKVQHFGTGSVGTIIDTTYDMETPYQQQLCVQWEDDKAPHKDSWERRTALSIIPHGHYDFSIAD*