Scaffold Ga0114905_1004116

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1004116
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6958
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10041165	F028039	AGGAG	MTTLLGRWETIVKQIRFENNWAEILKSYLEEQKLDELPEPEWSDDPTMAYVYLPTRTLKGTLVRYDRTKARMFPESIVGYLEKGGLMKLPAKVAASKTKEQLPKMETEKPKLDKKIEKLGDLQDE*
Ga0114905_10041168	F042628	N/A	MGKYNKSNKNNIFRDKPEITISEHNVVKNGKKMKIVVPEGKIGYGDVESHAQMAGDLATKHSDDNKAGEKAYEEVRRHRDTDSGSTIEENKLKVAYGKMASRMPVIQQFNITDNTGKHIATEYLFMKTEPSGLTRPLKIRVDLDTGKAQEIPV*