NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114904_1137476

Scaffold Ga0114904_1137476


Overview

Basic Information
Taxon OID3300008218 Open in IMG/M
Scaffold IDGa0114904_1137476 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)5.24Alt. (m)Depth (m)2820
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101873Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0114904_11374761F101873N/AMELRDAETTLDDTKVLCEYWCLKNDPDVKVIGTELQCHNLFTKMLKEEGWQIRLDYQDELLPEYLKAYEDNKKKP

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