Scaffold Ga0114904_1017780

Overview

Basic Information

• Taxon OID: 3300008218
• Scaffold ID: Ga0114904_1017780
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_10177803	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYINNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGIFIGG*
Ga0114904_10177804	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGNVGASVGSLVGLEGAGRNVGEFVGSSTSSLAGGSDSGISPLSTADQALEQSAVPVSQIGQTGPRETSMVGTTGMTQQAGFGSLLPGIIGGARTIFPQIGKFVSTPGGAIATGVGTSVGVNMFTGSDMSKMKPVLTQSRRNKARVRQLVNFMGIDGAAQFLSQASGQNVTGNDVVQLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMARSTRRPAMRRASSTTLIKN*