Scaffold Ga0114904_1010527

Overview

Basic Information

• Taxon OID: 3300008218
• Scaffold ID: Ga0114904_1010527
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3071
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015531	Metagenome	254	N
F034711	Metagenome	174	N
F049222	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_10105276	F034711	GAG	MKLDKDIVKNKKKYSSFYTYDNAYGPGFGFRWKEIPAAQTNIVHKRVTSSKTWTKLVQGYSGLGIIYRGHYRP*
Ga0114904_10105277	F015531	GGA	MKRLKSAMKDKEIKAMYKIYKVKFKGKDSFKLYVKNLLEFFRITMDIYCFGDRVPPKNCGKWNKIGEWGRAEAIQYWSQLCKIKYKDINKYFYSVDDFSPYT*
Ga0114904_10105278	F049222	GGAG	MNNEYEVTIEKHWSGKTYNVSIIGWEGNEGVSFGRAFNVSKKKAEKEAKENADLYNAKIIRKY*