Scaffold Ga0114904_1006701

Overview

Basic Information

• Taxon OID: 3300008218
• Scaffold ID: Ga0114904_1006701
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4235
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014552	Metagenome	262	Y
F016735	Metagenome	245	Y
F105881	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_10067011	F105881	AGG	MTDATFAAIWILSFGLYLLIYTYWIPLKTQKKIEHWLMSEESNETLLASLSVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAQKLGDTEEGSQLSLLH
Ga0114904_10067017	F014552	AGCAG	MSLAKKNKYSLGTPSLMRGLDKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHESYSSLPKEGRRLTWRTNCHVVRVTVMDLFNNNTEDFQKDWYDCTWTISCKEDGNIWIDA*
Ga0114904_10067018	F016735	GGAG	MTDAMFAAIWILSFGLYLLIYTYWIPLRTQKKIEHWLMSEESDETLLASLGVITNKIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAQKLSGTEEGSQLSLLHSMTEELKDQPWYVQAAASKLIPVIQKAADNQGKEKVTKLAHGKFGFD*