NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1163192

Scaffold Ga0114899_1163192


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1163192 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002744Metagenome / Metatranscriptome533Y
F028523Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0114899_11631921F028523N/AVATMPHIDDRLEPSKVKSVSVYNVGDYGMDLFLPFTDVGLTETAITFSTATLTRDLEHSHQPMDDFPAVYSDTDSGILLNEGNDTAFSQTYSYNPDMTAVCYALH
Ga0114899_11631922F002744N/ATRPTNETQGATAINTRTQGGDMTIQGGTEITGLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTATGLGSNANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT*

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