Scaffold Ga0114899_1148632

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1148632
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 764
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010947	Metagenome	297	Y
F040339	Metagenome	162	Y
F054357	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_11486322	F054357	N/A	MANVAYRRGDIITHPMAGKAWLHIAEVRFSGHRGYVYECINQITGKKVTLLADGNPSIGLVSKMMRKR*
Ga0114899_11486323	F010947	GAGG	MRKNIEKLLNPDLVDKWKNEGKLQGIHFSKGDLVSYTACEGDSLGIVLAQDGIMASVQWTKQPDDFNLQRRVFISSLKLISGVNK*
Ga0114899_11486324	F040339	AGGAG	MSIKDKLYRETYGDLMYRLGQMDAILQDLQGTISRFHEESRRIREGQPPQIVRALDEVLQRNAQT