Scaffold Ga0114899_1107016

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1107016
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 938
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037944	Metagenome / Metatranscriptome	167	Y
F043620	Metagenome / Metatranscriptome	156	Y
F074035	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_11070161	F074035	GAGG	MTSRGLLTHFVLNRPRDHWREVSCKEIGCVNYAMGWKTILPADDIANIEMVRRSNLGFREEREDGLIIFTFTPGQECFTGQ
Ga0114899_11070163	F043620	GGTGG	MRFLALTVLAGGVAIIGSALMLGWLYEGPRRLLKTAACYIGFHGRETWGVNPANQNSEPYCRDCRRFLAKVY*
Ga0114899_11070164	F037944	N/A	RISNRLNNGLDRDGFTLGVSLDWSHVFLGICGLGFAILIFLVGLAYGVGVLCDS*