Scaffold Ga0114899_1025092

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1025092
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2268
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10250925	F009536	N/A	MEKEMMKQALELMPGELKEEIKSNLENPRSYTRLFIKVLDEIDRMKVVLPKFTALKNNILKINKKNHSKITNEMKHFVPKTQSSISPKDIDYWIQTAKKGDQLVYYTGGTFDRRSVKDESVFRKARNLAMDYDNIPFKNKKYQYRGSVRGEWGCTYKNIITLVQKRVAKEQRDKIWDEEKKKYIPGNIISYPIYNYIMIKQ*
Ga0114899_10250926	F013896	N/A	MICDKCNGNGFTLVKGETIQCKKCLSSGELPGTIQPPKYSDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ*
Ga0114899_10250927	F080498	AGGA	MIKKIIIFHLLLFFIVVLFSCAPRTHVAPKPIEKDNQFMTHLLRNIITQGLDF*