NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1025092

Scaffold Ga0114899_1025092


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1025092 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2268
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F080498Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0114899_10250925F009536N/AMEKEMMKQALELMPGELKEEIKSNLENPRSYTRLFIKVLDEIDRMKVVLPKFTALKNNILKINKKNHSKITNEMKHFVPKTQSSISPKDIDYWIQTAKKGDQLVYYTGGTFDRRSVKDESVFRKARNLAMDYDNIPFKNKKYQYRGSVRGEWGCTYKNIITLVQKRVAKEQRDKIWDEEKKKYIPGNIISYPIYNYIMIKQ*
Ga0114899_10250926F013896N/AMICDKCNGNGFTLVKGETIQCKKCLSSGELPGTIQPPKYSDDDLTNIYQTLYEASLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILETDVQPYKKETLQ*
Ga0114899_10250927F080498AGGAMIKKIIIFHLLLFFIVVLFSCAPRTHVAPKPIEKDNQFMTHLLRNIITQGLDF*

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