Scaffold Ga0114899_1014245

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1014245
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3212
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088726	Metagenome	109	Y
F095325	Metagenome	105	N
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10142452	F095325	AGGA	MNEEQQPDWDNINRGKVRHFFALELYKYKLRNSDKAHLKPTEIGTIEMYVEYVMHGADFKEVVKEKSALELMSKKECEDIITARLRDIESITADEHTKAIIHLEAKGLKDNDLKPVLEALDAGKINQGNLTASIDKINDIKSEYDKE*
Ga0114899_10142455	F099127	AGGA	LTDSPAYYDLTGDSDRGKLPAGNYEAIVVDMSTVTDIKCGVFIADIFKPVYRVDSGDHKNMEVIDNGIFRYKQVNGYEYESNKNWGFAKFMQMLGMYNKKEGRINLPYIKNNDIVNKRMRIMVWDKSFMNETNERISYPVARAISLINEVPF*
Ga0114899_10142457	F088726	AGGA	MDKQDMIGRALIKFSESEIDLILTALYNTEKINIPRTDASWKRPYTNLIKELLHIKETLEKEKERQQ*
Ga0114899_10142458	F103082	N/A	MKNPTATRKKKRPTVKQLAGDVESLWSGMMFLDKNITTMQRFFEEYLVMKNDVEKFMEHFEGRIEDAKKERNNNE*