Scaffold Ga0114899_1013981

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1013981
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3250
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F035271	Metagenome	172	Y
F055665	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10139811	F055665	N/A	ALTKDNPMTGFVAKNKTKRGNLGGLVSQNTPKGIDSERSESGKLGLK*
Ga0114899_10139814	F001227	AGGAG	MAPRAKKRTTKRKRTFSVNLIETGAGLAFLDASNAGKAAQEMVGGNIKTGLETLSTAFKTNKDQMIRIGAGALAAKLVVGSLGGSKILGAVGPLKLRV*
Ga0114899_10139819	F035271	AGGA	MSYALIPDGYSLKKVTKAQKQAVIDKRRHDNVVTLVENPEIIKQIIITGAAFLIAREGKQALGDLKDLGVNISKDVEDEYTKKRQFGDAPIGVSIEQLVEATFERFGL*