Scaffold Ga0114899_1011992

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1011992
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3579
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061351	Metagenome	132	Y
F084098	Metagenome	112	Y
F095332	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_101199210	F095332	AGGAG	MKPINIDKDCKFLKDIDSNPTMAMYNLITSKGAVQLWTKGIKPHSNWRLKDIKIYFGITGNADKLYTKLSTMLRVLNERKKNG*
Ga0114899_10119923	F061351	AGGAG	MNSKDIERIVRWAVDTELEKFAEDAYGITGTAFERAESGEYLRDKFTQMQSNFIMWIAGLSDINRGRLNRAINKQKTLDDVLNKTKGE*
Ga0114899_10119924	F084098	AGGAG	MAETKEKDYQISSLIIDACDTLDYEWEDIQKGDYDQDDVVHEIADSAVPIYYWDIAQYAAWNTELMTEIPEIGHDCTPHKMIQLNIYEAICEGLYEHIAEKEKEDE*