Scaffold Ga0114899_1006983

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1006983
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5063
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F008596	Metagenome	331	N
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10069834	F021554	AGG	MIIEEIPFFVEFVITGIVLGFGYGFTKLFLNHAKDKSKIRKSERKAQQSHNLEDEMDKYLDNSASIVAHLESEITNLKSQGATPEQTKRMEGELNLAKKVQQYEPIIRIVGKPMLKKVMSIIDRV*
Ga0114899_10069835	F002100	AGGGGG	MSFKPALIKPTYDVANYGHDTSLPLNCISGNVATITPSTSTFVQVLEDSRVPIDEVDLFITDSDKMALIHLGDDTDWDKTWEWAPDMSAQAYTLTFNFAVGMKVSSYSSGNFKISDVQVICNQIGGGEGTVNFVNKIIDPGMSNMTSAVAQVAIINFSTTVSTKVFDKPLTFQIKVNTESGSGTYQTGIIPLFCYFGTAIPKTWTTSSVLMHLHADLAHAFPIFRDEDNMNMVDTGIGI*
Ga0114899_10069836	F008596	GGAG	MSGSWDIAVPSSIGTGVAKTTINDGNNVTKPTQAVNLVEVVPFDSSSGAMTAAESIAVTMEIDSFSVDLLPKRIIVPPIQSGLGTIANTVIPLLEAYECNTGLQEGATSQFIISGQHQVGTTVATTLGCALHYSTTRPNRPEHFYHKPDDESTFTAATTTTGNSFTINDGMWVEDLYVSAWQAVYTVSQSMIGYGSFSSNDFGNSLPLKVPMQPGGAGLGNAGTTGILQLASYHNIHMPMKTSCKINTAFTNDVTQSGTCSFILGVGYTKQ*