Scaffold Ga0114899_1006746

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1006746
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5175
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis → Candidatus Nitrososphaera gargensis Ga9.2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_100674613	F078831	N/A	VLPGAKSKYLEAVSITINGLQNGSTATTIANALGLVNPLEIDVGGIPQIRVRLADMYAMDMLWLQHNPLTKISAGDNQEWIVNQIVYPCWFPPSRAEATLTATYAAVTNADETEVSITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWSEIQNPGIFNGQMFNALEESPATTGILDNYRWLSLAKEPIPAGTRVQTDIMAGVDSSAIRTVQVQQVPFRGR*