Scaffold Ga0114899

Basic Information
Taxon OID	3300008217 Open in IMG/M
Scaffold ID	Ga0114899_1004246 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008217 Open in IMG/M

Scaffold ID

Ga0114899_1004246 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6961
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6961

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)	Depth (m)	1200
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.09

Long. (^o)

11.46

Alt. (m)

Depth (m)

1200

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018016	Metagenome / Metatranscriptome	237	Y
F019029	Metagenome	232	Y
F027019	Metagenome / Metatranscriptome	196	Y
F089009	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_100424611	F089009	N/A	QMIVPDFKKIVKFDREFFDKLGKKTVVQHRTVVQVDGINARTNKPFVQYTTDYKRRKSQGKAVKKGQSQRSNKVNPPNLTLTGQMMDSFKFIRASNSGFIYGITDSRQAQKLTGNQTGHYGKNTNTRKKRIVSDKENPLPIKVKDKVGAAIAGKIAQNFKDVFTSKGYVVNIIRM*
Ga0114899_10042462	F018016	GAGG	VQKKVIRERQDKILIDTPYGTIESDSGNHLVDIATVVFIILVCALLKFKVLKSMFKKK*
Ga0114899_10042466	F019029	N/A	MLNLQLKLTSFVTQTARLARDLWQTINDVWENEHRKWNDII*
Ga0114899_10042469	F027019	AGGAG	MAISDALDVNVHSGGTGAVTPNIADQFIPEIWGQAILDVFQQTIMMNNVGIDLSPDVASHGDVIHMPHIGVPELEAFTHGAEIDADVTSAGSMTSEQTNLTIDQYNVASAYVPDIVEVQANYDLLSIYAKQLGYACARGFDNFLHYQVANNFQGLLASATGAIGGDANTSMHIQSTGSALSQANLTSLMALMLGETGSTDGWHLVLSPDMYSSLNTLTSYSQGTQAPLGADFGRSGNAGSLLGMPVWVAQSPYMGSASGGADVAADATKGILAVADLETSGTDDNDIVYGYVIHESALYYAFSKQAKMTASYRHAYLSTLVTCESVYGGAIRNTDADGNRRAFAIVDYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114899_1004246

Overview

Ecosystem & Geography

Associated Families

Sequences