Scaffold Ga0114899

Basic Information
Taxon OID	3300008217 Open in IMG/M
Scaffold ID	Ga0114899_1004019 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008217 Open in IMG/M

Scaffold ID

Ga0114899_1004019 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7205
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7205

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (56.25%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.09	Long. (^o)	11.46	Alt. (m)	Depth (m)	1200
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.09

Long. (^o)

11.46

Alt. (m)

Depth (m)

1200

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F021554	Metagenome / Metatranscriptome	218	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_100401910	F008596	GGAG	MSGAWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVELVPYISSSGAMTAGESLAVTLEVDSFSVDLLPKRIIVPPIQSGLGTTITQVNPLLEAYECNTGLQEGATSQFILSGTNQIAPTVATNLACALHYSTTPPSRPEHFYHKPDDETNFNTATTTSGNNFTVNDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ*
Ga0114899_100401912	F021554	AGG	MIIEEIPFFTEFVILGLLLGFGYGFTKLFLNHTKDKNRITRKEKKVENDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELQQAKMLQRYEAPIRIFGKPLLKKAMSLIDNFKV*
Ga0114899_100401913	F002150	AGG	LVAIPATVLATEIGKRRTKVSGEFLEQKLGYNFVDLVTKLALFYIIAFLIAKYMEAILYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTAPGQFNPPGWDRQYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVVFYIGWETYKYYKTAKESKKGVDFLTIAIFSLLSLMIGVLGFSKFLGKFSLNKFQEANK*
Ga0114899_10040199	F003270	N/A	MARKTRRKRKNKNGKRKTVKSLARTWANRLASPVAFWSQLSQKDYEVLNASPQYQALDYLGKLKVASNILTGSLTGRVLFSDQYNPSPDGNPRINPAGVVNKWTGIGIAGKIYSLVGKQMGLPEQATIGRIGTKLIYGGAVGGFFDPPSAQGRVSTYAVTPNVMVQNRATTQRRHSQFKRNLNYVPPDSFDYSTGSAFR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114899_1004019

Overview

Ecosystem & Geography

Associated Families

Sequences