Scaffold Ga0114899_1001544

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1001544
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13427
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (74.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001065	Metagenome / Metatranscriptome	789	Y
F040675	Metagenome	161	Y
F052643	Metagenome	142	N
F055183	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_100154410	F040675	GAG	MGLEAVGILPFEKEPTIEEVENQTALYLNENLMKVEQDGNFYVDDRYVLTYEEIN*
Ga0114899_100154419	F055183	AGGAG	MNNCIIQLEVDHCFKGGCDGPSVTNVGVFKNKAHAKKFMRNDKGFRKIFKAPNIKKSILPIAIWAVPGGR*
Ga0114899_100154420	F001065	AGGAGG	MTDIPILDKGIDDWGKDEQEEAYDKLQSLKQDFEGVPTKLYINEDEELQSYIMWFARMENLPYEITDGETRIC*
Ga0114899_10015449	F052643	N/A	MKDSVYLKLKSKGLIDENDNVQFNGELVPYYYLNEDLTAFNPPTGDMPYQSDEWFYRFLKKHGRLNININSKSEIEYEMFKLIDIGKYKKRNLIKALREKFPKVNAGIIHRLIKKKLELRQIEIDRTYKTKPYVIKGKYFICKIT*