Scaffold Ga0114899_1000807

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1000807
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20422
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003611	Metagenome	477	Y
F009213	Metagenome / Metatranscriptome	321	Y
F087034	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10008074	F009213	N/A	MEVNKMVDNKKVYLRTTRNLYYKQEKPNLKVYYSYTTPVAFEIDGVLKVSENQWSVTTGRHLTWIDGGNKKSRLKREEFNQLVKQHKPEPNFMKSVSMVSAVFGLMCQNDIKTKNKYQKKFFDKVEGINFPNDWNTLSEEEKSRRLEGATKIGLEK*
Ga0114899_10008075	F003611	GAGG	MKELFYAVYFALHFAGAFLGLIIAIHLSFWLGISMFVFFIIKFCLMIPSIEKQI*
Ga0114899_10008076	F087034	N/A	MVKNEKKLESKILKMDCYDQELWVADNQDIISNSSNEFKSFIEGLDFETSQSALENLNADFYTQTIRG*