Scaffold Ga0114898_1131383

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1131383
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F015994	Metagenome / Metatranscriptome	250	Y
F058451	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_11313831	F000126	N/A	MKYKKINTINMNKRDFSITRRTGEWYDARVTDSYGNEYQNYFEKSDEAHDWVYYIWEKEEWFNSVNSQELLAKAIENCKRLDKNINVREI*
Ga0114898_11313832	F015994	N/A	MFKVKENDVFEKNMTNQELHKVWTKMKWEKDMDEWFDQLEKQYNEVQENKYY*
Ga0114898_11313833	F058451	N/A	WFNLPTSTIVTKTILVEMDKYEGRKGQGTVQITNDGPSGFSQFKTHQVNPIEYVMTREEYKSGEYKLVIK*