Scaffold Ga0114898_1053441

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1053441
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1282
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056525	Metagenome / Metatranscriptome	137	N
F093704	Metagenome	106	N
F093705	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10534412	F056525	N/A	MVNSILKGKHPKTLLEVFSEEYDMPVVKGKHYPYTKKGKAAAAAAKKRSKKK*
Ga0114898_10534414	F093705	GGAG	MNQDRYWERLEQKIDKFLMNDFRHMAEDVASLKTAMKWVYSLLFLLLAAAVGVLGREIL*
Ga0114898_10534416	F093704	N/A	LLEIRARPAMTSAGTTPPEIVSIRVKSQLHPDPTKIYPVDLYLADNQIILSGAEGGRVKGDLSQLETWNAGASDLTLTTPDKETRQVIFLPGSMQKQESFKEHGRHPEYHVRFLLAEV*