Scaffold Ga0114898_1040828

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1040828
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1511
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051571	Metagenome	144	Y
F053973	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10408281	F053973	GAG	MKKSNEFHFGATSVMREVPPGQTAVIKFNGKLEEIETEWGNKMKYPILLFSHPSYESISKEGIETVWQSNSQAS
Ga0114898_10408282	F051571	AGG	MRRRAPRQFGINVIETGAALALLEQTSAGSAMKSFIAGDLNTGLTTLSKAAKSNKQAISKTLIGAFLAKAAVKSFSRGSPVLASLGPIKVRA*