Scaffold Ga0114898_1037148

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1037148
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1600
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10371481	F045144	AGGA	LTWQKGLYYHLHKTGKTIRKHPDGKDPLKQKLFGKTRVCVKCGKRKSTLLFHWKTDYRYKNKVTKRLQRRCGACRVKQDNEKYSATAEAYLRRRIGTLKSNCHKHRGRKKVLLTADQFYNVWKKQRAETGLKCPMSGETMTHTLGRGEVLTNISVDRIDSEKNYALGNIQFVCLMANIMKNKYDNKNLLKWSKKIVNHLGRK*
Ga0114898_10371482	F080498	N/A	MIKKIIIYHFLLFLIVLLFSCAPHTHSVAPKPIEKNNKFIEHLIRNIITQGIDF*
Ga0114898_10371483	F013896	N/A	MICDKCNGNGFTIVKGETIQCKKCLSSGELPGTIQPPKYSDDDLTNIYQTLYETSLKLSESSDPGMVAASLMAIGSRIYKTILTPEDYDRIMERILKTEVEPFKKETLQ*
Ga0114898_10371484	F009536	N/A	EIDRMKVVLPKFTALKNFILKINKKNHSKITDEMKHYVPKTQSTLSPKDIEYWLQTAKKGDQLIYYTGGTFDRRSVKDESVFRKARNLAMEYDNIPFKNKKYQYRGSVKGEWGCTYKNIITLVQKIVAKEQRDKIWDEDKKKYVPGNIISYPIYNYIMIKQ*