Scaffold Ga0114898_1033031

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1033031
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1719
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004769	Metagenome / Metatranscriptome	424	Y
F011621	Metagenome	289	Y
F032720	Metagenome	179	Y
F079221	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10330311	F032720	N/A	PVYEVGQFVRLKPFPSGADGIRCICNPDEKSVVQPLPITAPELGACWHGPKTTVLRVFPDGDLLLENRHGFVRGARPDEVCR*
Ga0114898_10330312	F004769	GAGG	MPGHDQKTTRVQVEVDGFTWRVYGGKAGLHWHCHLVELVGPLPLDGPVTQPLRDKIRTALAKALALDESEIARIPADLILA*
Ga0114898_10330314	F079221	GGAGG	MVWRDGGMSANYWECTFCRQRSRVAKRIILTIENGNLGRNMIKCCDLECLRRLLALWEELETKRVNNA*
Ga0114898_10330315	F011621	GAGG	MPDIGDICRARDLGMVGGRLYIWAECPVCHLQRWATTRPLDKGTRRKCQDCVREKSKRVFKIGRAHTIDQV*