Scaffold Ga0114898_1023579

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1023579
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2111
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F010737	Metagenome	300	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10235791	F005319	AGGA	MTDAMFAAIWILSFGLYLLIYTYWIPLRTQEKIESWLRSEESDETLLMSLEVITKRIREQMLIDFEEFMLPQARENLQKFWAGAMGAAAKEMKNSDEGAGLSLMHNIASELDGQPWYIQALGSKLLPAITEAVKK
Ga0114898_10235793	F005551	GAG	MTLGPSKSVSRAKDGKIYGWSGSYSLTSSAVTLLDYTNPSAFYLTRVTLGIDWSGISDGEVLSYTINVDDQALFVEKLVVLVNNIGIQPKMFEFIIPPNSTVKIQATESANNGAISCILTGYRV*
Ga0114898_10235795	F010737	N/A	TDNMSSSSLGNIQTPQGSQRISRIDVAMDAPDTKGVVLAGRLLGSNMSEQNLSLAGSCGDVADAGGTAQFNMIPTNFSVVGVNNIDLQVAFQFTSGTPTASSLSVTLYFE*