Scaffold Ga0114898_1022710

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1022710
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2160
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088726	Metagenome	109	Y
F099127	Metagenome	103	N
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10227103	F103082	N/A	MKNPTVARKKKRPTVKQLAGDVESLWNGMMYLDKNLTAIQRYFEEYLVMKKDVEPFLEHFEGRIEDARNKKEKGEDNENN*
Ga0114898_10227104	F088726	GGA	MNKQDMMGHALIKFSESEIDLILTALYNTEKINIPRTDAKWKRPYTNLIKELLHIKETIEKEKEKQQ*
Ga0114898_10227106	F099127	AGGA	LTDSPAYYDLTGDSDRGKLPAGNYEAIIVDMSTVADVKCGVFIADVFKPVYRVANGEHKNMEVIDNGIFRYKQVDGYEYESNKNWGFAKFMQLLGTYSKKDGKVNLPYITKRDVSHKRVRIMVWDKSFINETSDRISYPVARAISLINEVPF*