NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114898_1021443

Scaffold Ga0114898_1021443


Overview

Basic Information
Taxon OID3300008216 Open in IMG/M
Scaffold IDGa0114898_1021443 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2243
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F005148Metagenome / Metatranscriptome410Y
F007647Metagenome / Metatranscriptome347Y
F009404Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0114898_10214432F005148GGAGMKQKKYEEFLKRNLPESEEVECKNCGLKFYDEFNLICLATLDLCLLCANRNLDKETIQEKYNVKQ*
Ga0114898_10214433F009404AGGAGMSNNNEPEEIQPKGESLVKYCAICGVELEETVLTNRYWKCLSCESIFQVKVRAEN*
Ga0114898_10214435F001594GAGVEKTKLTKDEYLDSLDPDNLNLSKKDLLDFCHKCIEEWKKNKLGNFKFIVSMELILAGVKITPEDVLKAVWKKILVWFWDLQYKNALAEKEGMLRRLSGIGTS*
Ga0114898_10214436F007647AGGAGGLEQVRINHVVNEFFNSLKMDEDKMLDTGLTNNATVEVLRLAVLTLIQDHPKRFEQYVKFFEFGCMYLQDESDEIPEVEKIGR*

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