Basic Information | |
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Taxon OID | 3300008216 Open in IMG/M |
Scaffold ID | Ga0114898_1020177 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2333 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (91.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F067645 | Metagenome | 125 | Y |
F070003 | Metagenome | 123 | Y |
F078584 | Metagenome | 116 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114898_102017712 | F078584 | GGAG | MKAGDLVIATEDTYTFDKGDIGLLVDIDRGPPDKEYRPLYFVQWNNRPSRGPMDVHKNAIKTFYSM* |
Ga0114898_10201772 | F070003 | GAGG | VKVGDLVRFIGHRDGPCGIVLSFKHLPDSPHPSQPERDAAYIEWACEYTAAGNYQLSILETVNESR* |
Ga0114898_10201775 | F067645 | GAGG | VKPGDIVLLKEEWQIKGIYYGPGVIISIVEYEDEDFVSHKVQWNSDFSFHGTEELELISESR* |
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