Scaffold Ga0114898_1017893

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1017893
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2519
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F039091	Metagenome / Metatranscriptome	164	N
F042282	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10178931	F039091	AGGA	MPIAAESLRLGPWRSGVNYSLPAEDMPPDGLYEMENCTVGLAGEVAKRNGFAKYNSSAMNSGATVTACGQVVLAGTEKTFAFAGNKFFDVTGGTATDRTGTVTITAGNDYTWDWVLAGNTLIAVN
Ga0114898_10178932	F025388	GAG	MTNLQILQIALRRVGLNTGSSTFKDSARDYLNLVTQDIASREKWNWLFKSSTFNTTNGTRTYSLASDVLAPLSFRNTTEDHVILIMSTQDVDAADPDASVNGDPRWAAIDGVDGSGNVEVTLYPEPDSTDTIAYRYYSSIPTFTVSNDNDSITPYVAAVCQPALIHGISALYKQEKGDDQGALSDKQEMERVIAVAGRQNMNVQGNRTYRMRRADDHISGKFSFQPTEGSIG*
Ga0114898_10178934	F042282	AGCAG	MAKRMAPQKQQEHTLPDEIAEVTSTTPVEEPTASVTPDQIADLILKGSDETKNAIRKALDLDKTHTRQRKSPITNSQVRNHVRAVGEVTHEPGFVPEPPSRIADRGEEAVRIWQDRWLDNNGDNLSEYDLDQLAATAHQ*