Scaffold Ga0114898_1015571

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1015571
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2751
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005319	Metagenome	405	Y
F005551	Metagenome	397	Y
F005580	Metagenome	396	Y
F014809	Metagenome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10155711	F005319	GGCGG	MTDATFAAIWILSFGLYLLIYTYWIPLKTQQRIEEWLRSQESDETLLMSLEVITKRIREQMLIDFEEFMLPQARENLQKFWAGAMGAAAKEMKNSDQGAGLSLLHSITQELDGQPWYIQALGSKLLPAITEAAKKQPKSTEKQIIGMGLQE*
Ga0114898_10155713	F005551	AGG	MTLAASKSVSRAKDGKIYGWSGSYGLTSSAVTLLSYTNPSAFYLTRVTLGLDWSSISATEVLSYSIAVDGTVLFLEKLVVTANNIGQQPKMFEFIIPPNSTVKVQAAESANNGAISCILTGYRV*
Ga0114898_10155716	F014809	AGGA	MVTTITRTFDATPTDKEYFSLTDNMNSSNLGNIQVPQGSQRISRVDCAFDTTNAKGYQVACRLLGSNMSEQNFTIMGVAGDTADAGACVGFQSVPVAFGISGVNNIDLQIAIQFASGGSASASSGSVTLYFE*
Ga0114898_10155717	F005580	N/A	PRRKMRKSIPHPSVTGMASGLAIAAYLNQGRETTTRTNGFPTTSTVEGVIKDITDGELGTAFNTLSHNAINMIASDGGRKTLVTASGIAILGAFARKQFPQLKLGGSKLYFRI*