Scaffold Ga0114898_1015201

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1015201
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2796
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F001136	Metagenome / Metatranscriptome	767	Y
F012880	Metagenome	276	Y
F016013	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10152011	F000782	N/A	DIKIIRNRKDSMTKQEFKSSVKGIFSVRWLKNDGSERYLHRCILGLNKKVDGQPKEHNDYVLVYKIGNGYGNQRRWGNVNPNTIIQINGVAV*
Ga0114898_10152012	F012880	GGAG	MKFNVVTGIWSIALVLLTFQLFLLGYDWEFTNTLIYKFVLLMNGFMFGMVMFDWSR*
Ga0114898_10152013	F016013	GGAG	MAKDLITINKVDVSPLLKEVVEYAKDQNAVGDLEALISKVPMKDSLDWKLISGVLCNAIIEWVAKDTNNRKDLIVHLQKEVGYLLQRLGLTM*
Ga0114898_10152015	F001136	GAG	MVVDESITNSLNRIADNQEEMIDVLKRIANHYDGVVPVMTRNAKRAENMAEEAERGFGQQVKDLFRPQEH*