Basic Information | |
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Taxon OID | 3300008216 Open in IMG/M |
Scaffold ID | Ga0114898_1015201 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2796 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000782 | Metagenome | 894 | Y |
F001136 | Metagenome / Metatranscriptome | 767 | Y |
F012880 | Metagenome | 276 | Y |
F016013 | Metagenome | 250 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114898_10152011 | F000782 | N/A | DIKIIRNRKDSMTKQEFKSSVKGIFSVRWLKNDGSERYLHRCILGLNKKVDGQPKEHNDYVLVYKIGNGYGNQRRWGNVNPNTIIQINGVAV* |
Ga0114898_10152012 | F012880 | GGAG | MKFNVVTGIWSIALVLLTFQLFLLGYDWEFTNTLIYKFVLLMNGFMFGMVMFDWSR* |
Ga0114898_10152013 | F016013 | GGAG | MAKDLITINKVDVSPLLKEVVEYAKDQNAVGDLEALISKVPMKDSLDWKLISGVLCNAIIEWVAKDTNNRKDLIVHLQKEVGYLLQRLGLTM* |
Ga0114898_10152015 | F001136 | GAG | MVVDESITNSLNRIADNQEEMIDVLKRIANHYDGVVPVMTRNAKRAENMAEEAERGFGQQVKDLFRPQEH* |
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