Scaffold Ga0114898_1009798

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1009798
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3764
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F003706	Metagenome	473	N
F006816	Metagenome / Metatranscriptome	364	Y
F019729	Metagenome / Metatranscriptome	228	Y
F100970	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100979811	F006816	N/A	MTITESAQNKVNQTLNGEGFLGVYLEGGGCSGYQIKLKPEMDLPPDAEMLSETIFSDATSLELLGDAVMDWDNDPFRPSFHFTP
Ga0114898_10097986	F003515	AGG	MKKILTGIAAAMFCFMLYEVKAGPPEGMERQMIQFPAVCLPATVAENHFSVLVGALINDYGVHISMTFSASPDKSKRVAIIENPHSGLVGVLMVSNDQTCIAFSGEDRQVFVRPPDHPIGKMNEDTET*
Ga0114898_10097987	F003706	GAGG	MSEVSDVEIGKLIQKVESLEVMVRGQNDRLDKLDKQLERTRGIGIGVVLATVGLSGIGGSLFTRWLSG*
Ga0114898_10097988	F019729	N/A	MKHLKDINMSWSIHLWYAMTLAMRLFLLSLTALVHGMFPFIFISTVSDGVNQLKNDLDQRNHT*
Ga0114898_10097989	F100970	N/A	MTKIQKVILNHYKKICGPEMAARIIGNHENNFRIFLGVVEKKLESRKPRENYDGREEEAGL*