Scaffold Ga0114898_1007858

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1007858
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4383
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011121	Metagenome / Metatranscriptome	295	Y
F056527	Metagenome	137	Y
F082536	Metagenome	113	N
F087032	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100785811	F087032	AGG	MTIEQIIRWFVDTDGYEFAEQIYGKTEDDFHNDGYVAGKFRLMQTKPITWMASLDPQNRKRLEQAITKQKGNNNETND*
Ga0114898_100785813	F082536	AGGAG	MSKQGLAWSKLNEFISKNTGMCMQDLPDFDIHNWVEDDFTEKEIDSLIPDMAWDVLDNAGMDRKTVNTICYGEDCDE*
Ga0114898_100785814	F011121	AGGAG	MPASPIVKKVELPDNWVQLQKMFTSDQATGCYWSVWYDVDHKESEWRDNWKGTAWLMWCAIGEDPSVNDSWCHAEEINGDCKNVLNVIESVYGVSFHDSIYVEMGVGETFPAR*
Ga0114898_10078586	F056527	AGG	MGSLKNILLHCQENEKDYQRYGVISRDRDVNKGWIECCEFFLRNFDLTEKTINEE*