Scaffold Ga0114898_1005935

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005935
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5302
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059353	Metagenome / Metatranscriptome	134	N
F062676	Metagenome / Metatranscriptome	130	N
F070005	Metagenome	123	Y
F081425	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100593512	F070005	AGAAG	MKKANKYIEPQRYRLNNISVKEIKDKYPDKIVDAYVKNGRLVLVLDTCRIKFDERINQKAENKYGAIHTGKLVESS*
Ga0114898_100593513	F062676	AGGAGG	MKVKGKRIINSEDALEFANSIRGQYIISQALTIANGVLETYEVDEDVIRAEPSNRADMEFLLKAFPLYRIHEVAIWKEENDEESE*
Ga0114898_10059354	F081425	GAG	MVTYETMYPTVSPVEDKIKLLLVMRGYDRNKIAFRNDVYNRELRYGYWEFVKTKDIEYVETFSGVKFNTFSTEDDDCGPLISYPFKETKNARSRHSAD*
Ga0114898_10059357	F059353	AGGAG	MGKLSVADANELLDKGIITKDTLAKMQKDGLVSTRSKSAERYIQSDSEVWVTPIFYFRGLGGSKYTVKMTELRTEVSKVIEKYTVNKHEVVKLETKNRKNSKGANGK*