Scaffold Ga0114898_1005844

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005844
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5357
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030886	Metagenome	184	Y
F057769	Metagenome / Metatranscriptome	136	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10058441	F057769	GAGG	VTIEVGSIVESIGFVQGYNKSNYGLVISLTADDKIARVFWMATQQSGYCSVKDLKVIV*
Ga0114898_10058442	F067640	AGGAG	MIEVGSLLRMKYSDTTWLALDEIAETVLVVNQKTNRTMWANKSAFEVIG*
Ga0114898_10058444	F030886	AGGA	MSYHGYPPPEYDKIGIAVVNPLIRIEKKLQKVQEVLDSIGEDSALTAADLKIKIQKVIDDDEDR*