Scaffold Ga0114898_1005772

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005772
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5403
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001992	Metagenome	607	Y
F032306	Metagenome	180	Y
F033074	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10057723	F033074	AGGTGG	MPHLTPSADLRVPSQVKFLPVANATDYGEDLALHLTTVGMTEQAVTFSSSAITRSLDEDGQPLDAFPHVYSDTDDGLLLHEGNDTAFNTDYVFNSDMPAVVYKTSINVCMGLNVSAYTSGNFNLGNLVVTITEQGGSKRNIYTNTFASGAANLTGTGTSLHWFTVDIVEPFQVFPNQPITVNLTLDTTLATGTSQAGILSIAPYLKTAKLKSFNESCVSFHVHAALGHLDDVFRFDMKRIKSEAFNG*
Ga0114898_10057724	F000730	GAGG	MAELIAPEIIPFIWFGGIAITIYVFFHKFSDVIKEKFRQTNLTRRKEERSGNTDGQVDDLIAGAPRMLNEVNKIIQEQKASGVPDEQMKGLLQKKQMLELVSNNAEVINIIGKPILKKALGFMRSI*
Ga0114898_10057725	F001992	GGAG	MVAAGVALMGARAGLKASKQYSVSVLGYDFIGLAMRLFLFLVVGVLIQSYMTATIKGGSFLNSIAGFFNIKFPDTLPEPITKLFTTGYNGIAFWQILQISAILLVVFEYTQYDRSLKEKSEKPNATTQGLFLMIALGLSLMVFPQTIQKIKEMRILNGQT*
Ga0114898_10057728	F032306	AGGCGG	MSFSQNLGHISQLGKIRKLPRLKLASTLNTWVTCPVCRGGGINSLPHQNGQVDLIMCPHCKGKKKYFNNDSQ*