Scaffold Ga0114898_1005682

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005682
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5463
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F012399	Metagenome	281	Y
F035959	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10056823	F035959	GGAGG	MPRAKSLVNVTFGATGEVYELGRIYDVPAEILKKYPDYFKKKAAKPRNKQAETEENK*
Ga0114898_10056826	F008778	GAG	LAQIDTLLAAISDPAFVAVYRGEPLAISGSPVLAFWLTGRRSDFETLGDIGSRVTVTIRAYFRMQDSADVRESIEEEVWDAMYQIDSQLRSDADLGGNVTDSSVGAATVGYQNMSGGVFRTVTVPYEMELYGEVTITP*
Ga0114898_10056829	F012399	N/A	MVDGLVVVQSRNGVKPFVIQRRRVNLVFEEPEYSGIHIEARLDVDLRTFLDLQSLAGATDSNPDDLRAAFSMFGDEILASWNLEDEGGRVLPADASGFLSLPPSLATKILGAWTEAATTPGEVSASA*