Scaffold Ga0114898_1005345

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005345
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5692
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10053452	F025299	GGTGG	MIIEEIPYFTEFIVLGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEVNSVEDELDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLNMVDKFGV*
Ga0114898_10053453	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVGDYGHDVIIPLNCITGSATTTLTPSTATFVQVLEDSRVPVDEVNQFITDSDKMELVHAGNDTDFDTTWEWLPDMSFQAYKASFCLAVAMKVSAYTSGNFAISSVQLTLKSVGGGEGDEVIVDKIINPGMANMTGVAEQVAILNVDTKTSAKIADKSVSMQVKVNTTSGSGTYQCGIVPLYCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRGGIGL*
Ga0114898_10053454	F008596	GGAG	MSGAWDIATASSLGTGVAKTTINGGANLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDDESSFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQD*
Ga0114898_10053455	F003270	N/A	MAKKRRRRSSKKRNGSKSIKSMIRQIVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDKVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVMVQNRSQTNRAFATAQRNRSFVPVDSFDYSTGSAFR*
Ga0114898_10053457	F008691	N/A	MASLAGYNVKEEATEVKKNLFENRDTFVMLVIASVVGGAITRFVIPKSVTEGSVFSRFKSWFGYDEDDDE*