Scaffold Ga0114898_1005059

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1005059
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5898
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y
F079215	Metagenome	116	Y
F105337	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100505911	F039339	GGA	MLRTEDVARVASDMGLVLDKRVTIQDGITYRYTLYDNNEFVEDFFETLAQAWSYIYYYDEEREYENLRPNIESA*
Ga0114898_100505912	F038405	N/A	LTKALQTGAEVSFMYHDKRRSGPLKDFGWGPQGPFITIQDSKYVNCPEGDIPHTEIKSFSLVKMSELRVEQFVGTE*
Ga0114898_10050594	F105337	AGAAGG	MARRRIIKRKGVDKFSGRKIKPKNVIAVGFEIVHKITDKRWLTISNVRPQNLLDLISQYNRGRHGWGQVRVKVKAYKEGCKVKRSKTGEVHGIVK*
Ga0114898_10050597	F079215	GGA	MQNLHRAIVSMPSDRNARPIDNFEHLTISYGRHSWAVKVPKGEFAQAHLEVTRKAEHDGMEDD*