Scaffold Ga0114898_1003439

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1003439
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7671
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F021393	Metagenome / Metatranscriptome	219	N
F062151	Metagenome / Metatranscriptome	131	Y
F064804	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100343910	F062151	GAG	MGTAIYDAADTVISLINDNWTAGRLPNIQKAWTKRSVGFGDSRSPQIILTPKTENVQYFGLYGSDFWHDVTLDLDIRSYQNDVRHNNIVKEVQRIIKANIRGGNDYTDIRVVSSYSRSHYMRNMFNHIITVSLRKLNP*
Ga0114898_10034392	F021393	AGGA	MVNEDNSNEQVEATEIAKSDDAEVQRVETEKSFQETVKSGFDTLTEVVQSIAESQKATQEVLGGLDNRLKALETPTDLPLSPKGTAASDDVGAKVTVPRDPYPQGVQAGLDDDRSGEDKPASDKGGLKMQKKSEDDTELIEKAEHTFSTETPRPSAALENVDKSIKDTSLILKDARAEGFEGLSNVARNILNGKYYVPSDDEVRGF*
Ga0114898_10034395	F064804	N/A	MVQIYHADKLAKARDLVIIFLFGSILIETITGIELLGSWWK*
Ga0114898_10034396	F001625	N/A	MAITISTSDWTNANVRKTLSWQAALTSKLRVYAVKVTFGSGDNYATGGVSVDLKQGKRIKTLVAVIPTYTDSLRHVQYDKANEKIQLFDVGGSSTAPFAETPNTSSACASKVFEFLVIGY