Scaffold Ga0114898_1002258

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1002258
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10272
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001136	Metagenome / Metatranscriptome	767	Y
F002506	Metagenome	553	Y
F017321	Metagenome	241	Y
F029465	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100225817	F029465	AGAAG	METKQSLYDRLAKEKERLGGKALRFPKTKQELLDRKRWERIHIILTRRYEYGIDSYLDDMRRQDHFDEIATIKNIR*
Ga0114898_10022583	F002506	AGGAG	MTNEVTTTENKSVNNVDISSVIKEVIEYTKDQATVTDLKHIISSVPKSDSMDWKLVSGVLMNSLVEWVVENKDNDDVRSLELIQHLQKDIGYLLKRLGLAQ*
Ga0114898_10022584	F017321	AGG	MTKEQFHDIVKLGFFSIKWTKNNGEQGHIKRGIIGQNGYRFTKSGEVREHPNYLLVFCVSNKGDHGWANVNPDTITEINNVSYTQ*
Ga0114898_10022586	F001136	AGTAGG	MVVDEHISHALNRIADGLEENNEVLKRIANHYDGVVPVMTRNAKRAEAMAEDQEQTFAQGIKNIFSPQEH*