Scaffold Ga0114898_1001777

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1001777
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12087
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (34.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F055187	Metagenome / Metatranscriptome	139	N
F060340	Metagenome / Metatranscriptome	133	Y
F070553	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100177718	F055187	N/A	MRVVNGNVIKSPADLVGLKPFKDAKLLRHEAIERMKRRMERNLKEAQEKIRLSLPYERSPDVPAEWDGWLG*
Ga0114898_100177719	F070553	GGA	MLDNFDAVAKLIEMNKQFRKILKELVANGFNIKQTQKGFRIAPPKSCTNQRVYFTHGGEACLHPIRRDFVKEYGYRINFKK*
Ga0114898_100177726	F007550	GGA	MKKLILLFLFVCSVSINAASLKIVPVQQKTLPNGNAYGLASGIYFELTNLEPFIMYKLQYSEDLTKWTDLVHLGTYKMAMTSPYWTWDELPPHKCFFRIVVAW*
Ga0114898_10017779	F060340	N/A	MKLELEKIVGTAVSAVVTAMVIGAAAIVWKGATTVDVKVNQATEDLSIQAAYITEAVVMLEAEVLELKTIVKSLAEHQEEFHHEIEIPQEQFIQRQLPEIRKGFRQRKE*