Scaffold Ga0114898_1001480

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1001480
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13740
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036653	Metagenome / Metatranscriptome	169	Y
F045801	Metagenome / Metatranscriptome	152	N
F073426	Metagenome	120	Y
F101325	Metagenome / Metatranscriptome	102	N
F103382	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100148012	F101325	GAGG	MQNSSSVDMANVDVKKVAQGMMRVVDSLDSFTKAEKYAILSAVFNCLYINKMMKERSISDVMEIIGKMRRDCKFKQIPEFGGAEKYIKGEL*
Ga0114898_10014804	F073426	AGGAG	MTRLYIALAVTVFAFLFYFSSKAPVLTSVPKVEKTIDMGIWSESNKGNSLAEK*
Ga0114898_10014806	F036653	AGGAG	MTVIYVVISLVFSAFLYEPLWFDTRMHYHHDTYQSLKACKHASIQVDETTGRVCVPKDNHSGHVDLYLTKD*
Ga0114898_10014808	F103382	N/A	MNELLITIMLVVPAPNKMVDWTINEVPTQIQLVHEDGTEVSYNATAVPCKYKPRSINEMVFVSPQAYEDNRCYSIFDLSRPLFIRHPHYWHKIELPNKPKDMDYLMEKERVLD*
Ga0114898_10014809	F045801	GGA	VFWIEIFLSIWALAAVRLLAIGHKLGPLIGWVGQVLWVSMWIYTSQYGFLLIDIGLAYIYLEAYFRGKRR*