Scaffold Ga0114898

Basic Information
Taxon OID	3300008216 Open in IMG/M
Scaffold ID	Ga0114898_1001430 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008216 Open in IMG/M

Scaffold ID

Ga0114898_1001430 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14179
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14179

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)	Depth (m)	3511
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.55

Long. (^o)

13.18

Alt. (m)

Depth (m)

3511

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F006641	Metagenome / Metatranscriptome	368	Y
F007893	Metagenome / Metatranscriptome	343	Y
F059356	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100143013	F003161	GAG	LDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWVQARTNGWQTLGDIGSTTTIMVRAYFRLQASVDVRESIELELWDAMVEVDTKLRSDANLADNCTDSTVGAATVSTIDLGGSLYRAATIPFSIQIYEEVTITP*
Ga0114898_100143014	F007893	N/A	MAEPFSLHFEVRGPIFDGTALKVMQGIVNRGLMDIAILEGANKVKDQLYGPPASQYWKSSPSERHGAKSRDLKRRIGVKLIEDNLAVFDAGKYSHGESIHYAEKIEARYHMFAKASQAIKANQAALQNKYIGDAVVEAFR*
Ga0114898_100143016	F006641	AGGAGG	MPKAICVQNFSSGGGEAYEAGVEYDVPAATLKANPAYFKQASRAANKMAETTENKS*
Ga0114898_100143019	F059356	N/A	VAEGTPAPVAGGAAPVEESLPVGTLKEWEDLPALKAPRVARRAGLLRRQLLEDREEETDDLAPKVQRYFRGLRNRVDGILGRYMERGAGESKEFPFDADMLMPTGEIPNLTAIVEMAMLRMSKKTVAAINANGLAGTLEWSEKLPFVQAVLVQAPARATMIHRTTNLILRRAVGTALESGYSIEQLARGVPADKFPGLRAILGETEKRARTIARTEIMRTQNQTSVGFFKEQGFEYVRADDIDGDASDTYIDPGDPYGRTCAERHNQIYTVEQAQDIDDHPNGTLNWQPMPRNYKPEETIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114898_1001430

Overview

Ecosystem & Geography

Associated Families

Sequences