Scaffold Ga0114898_1000994

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1000994
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18475
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012399	Metagenome	281	Y
F018619	Metagenome	234	Y
F028514	Metagenome	191	Y
F065679	Metagenome	127	Y
F091867	Metagenome	107	Y
F092707	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100099417	F065679	AGGAG	MNMTNGEARRVGKYHTGIKTKVGGVRMPVAKYEAVMAVFEKQGMSFSEGMERLVDTQILRTR*
Ga0114898_100099425	F018619	GGA	MVTAAILNAQIKANEDVLSAHAHSGAAGNGSSTLSGVSLAALTIPVLADQSGNPSTAGRIQRNGNNLVYYGAALVGLYADAVAGTASLRTLGTGSTQAAAGNHTH*
Ga0114898_10009943	F091867	AGGAG	METLTVEFQPDRRLSKNGLRKGHWRTTQPLIKQAREDAYILGLIEAEDGWQTPDRCRVSVKQYWCGKPFDWDGLATLCGPVIDGLVDAGAMPVEDDPSHILEYTMTAERVATRAESRVAVTVTPVSE*
Ga0114898_100099432	F092707	N/A	VDVCGDDIGGSLGLDIARWKAVRGGTYQDGRPISKPVELEMAEIVDGICQRYSCLPSAVLAEDVGILRMLTIVSEGKVEETSG*
Ga0114898_100099433	F012399	GGA	MVISTNGVGIRPYTVQRRRAVLEFADPEYAGMHIETRLDVDLRTFLDLQTLAGGADADPDGLRAAFRMFGDEILETWNLHDEDGTELTADADGFLTLPPALGTAILGAWTSAATTSGEVSAST*
Ga0114898_10009949	F028514	AGAAGG	MRLSDVQHTVDLSLEELVDELVAARATLAAQQQAVWYLEKAAIEGMKERGATVVKTDAGEATLRTPVSYDYGKLAQLREITCPGDLVGYTPEREVVKVERERWNMTQGKTLAKLSSQHRAIIEDAKIYGDPQIKFKERKGDR*