Scaffold Ga0114898_1000661

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1000661
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24518
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005072	Metagenome / Metatranscriptome	413	Y
F019730	Metagenome / Metatranscriptome	228	N
F047923	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100066123	F019730	AGGAG	MAGSDIFAASVNKAGLSNTSSNVATTVTLFGGPMRLKGFIIEPSDSPGVLTWKDGGTDIFEIETGNAAAGASTVQMNLPSEGIKFGTSIQVSSSLVGANVATINGVTAFYA*
Ga0114898_100066131	F005072	AGG	MERLLQAIKQKLKDHKQELSNNLLSKGVENLPEFKRVYGYGQGLDKSLQIINELIEKYKTGEIEDDT*
Ga0114898_100066132	F047923	N/A	MGAKADEIRQAKKFLENKKISIKKVKPHLFAIASNGLKKNFEATLDFFVKGSNGTSTTSDQTKTKRS*